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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17216-RA through 18771 annotations produced 1 hits



KP78a /// KP78b (KP78a /// KP78b):

Annotation Number : CG17216
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026063 /// FBgn0026064
Gbrowse : chr3R:7172079-7174163 (-) // 100.0 //
Probeset : 1639894_at
Accessions : protein= NP_001163587; /// NP_650065; /// NP_650066;, nucleotide= NM_001170116; /// NM_141808; /// NM_141809;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0026063 /// FBgn0026064.
Homophila reports that CG17216 is a close match (3e-11) to human gene ACVR2B;ACTRIIB (NP_001097), a gene associated with Heterotaxy, visceral, 4, autosomal (3).
BioGrid reports that CG17216 interacts with CG13625 CG3018 CG31211 CG6191 CG6987 CG3327 CG7948 CG2865 CG8667 CG4602 CG8929 CG2189 CG11266 CG33553 CG9915 CG2102 CG8811 CG9776 CG33109 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.20Down
Head5 ± 10 of 4 0.20Down
Eye6 ± 10 of 4 0.30Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland7 ± 20 of 4 0.33Down
Crop6 ± 10 of 4 0.30Down
Midgut11 ± 10 of 4 0.50Down
Tubule2 ± 00 of 4 0.10Down
Hindgut6 ± 20 of 4 0.30Down
Heart4 ± 11 of 4 0.20Down
Fat body2 ± 10 of 4 0.13Down
Ovary4 ± 00 of 4 0.20Down
Testis243 ± 74 of 410.80Up
Male accessory glands3 ± 00 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.08Down
Mated spermatheca4 ± 10 of 4 0.19Down
Adult carcass10 ± 10 of 4 0.50Down
Larval CNS210 ± 184 of 4 9.33Up
Larval Salivary gland9 ± 10 of 4 0.42Down
Larval midgut6 ± 10 of 4 0.28Down
Larval tubule7 ± 20 of 4 0.30Down
Larval hindgut59 ± 24 of 4 2.66Up
Larval fat body54 ± 253 of 4 2.40None
Larval trachea62 ± 74 of 4 2.79Up
Larval carcass27 ± 42 of 4 1.20None
S2 cells (growing)45 ± 04 of 4 2.02Up
Whole fly22 ± 24 of 4

Looking for CG17216-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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