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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17219-RA through 18771 annotations produced 1 hits



(CG17219):

Annotation Number : CG17219
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031494
Gbrowse : chr2L:3029256-3030617 (+) // 100.0 //
Probeset : 1634796_at
Accessions : protein= NP_608740;, nucleotide= NM_134896;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031494.
BDGP gene expression has embryonic in situ data for CG17219: 4 pix of staining in 1 body parts.
BioGrid reports that CG17219 interacts with CG7139 CG6447 CG6478 .
TRiP has 1 RNAi stocks for FBgn0031494 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031494 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 13 of 4 0.20Down
Head23 ± 04 of 4 0.60Down
Eye11 ± 11 of 4 0.28Down
Thoracicoabdominal ganglion12 ± 23 of 4 0.30Down
Salivary gland76 ± 84 of 4 1.87Up
Crop47 ± 14 of 4 1.20None
Midgut39 ± 34 of 4 1.00None
Tubule56 ± 64 of 4 1.40Up
Hindgut36 ± 14 of 4 0.90None
Heart31 ± 24 of 4 0.78None
Fat body62 ± 74 of 4 1.55Up
Ovary76 ± 44 of 4 1.90Up
Testis54 ± 14 of 4 1.30Up
Male accessory glands113 ± 84 of 4 2.80Up
Virgin spermatheca123 ± 54 of 4 3.03Up
Mated spermatheca171 ± 14 of 4 4.23Up
Adult carcass31 ± 33 of 4 0.80None
Larval CNS90 ± 84 of 4 2.22Up
Larval Salivary gland88 ± 104 of 4 2.18Up
Larval midgut39 ± 14 of 4 0.96None
Larval tubule27 ± 24 of 4 0.70Down
Larval hindgut50 ± 54 of 4 1.23None
Larval fat body26 ± 43 of 4 0.70Down
Larval trachea54 ± 154 of 4 1.34None
Larval carcass70 ± 164 of 4 1.74None
S2 cells (growing)62 ± 24 of 4 1.54Up
Whole fly40 ± 24 of 4

Looking for CG17219-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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