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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17227-RA through 18771 annotations produced 1 hits



DNA ligase III (lig3):

Annotation Number : CG17227
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038035
Gbrowse : chr3R:8224735-8227394 (-) // 100.0 //
Probeset : 1636131_at
Accessions : protein= NP_650187;, nucleotide= NM_141930;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electro
FlyMine data for FBgn0038035.
BDGP gene expression has embryonic in situ data for Cyp9f3Psi: 15 pix of staining in 4 body parts.
Homophila reports that CG17227 is a close match (3e-37) to human gene LIG4 (NP_996820), a gene associated with LIG4 syndrome, 606593 (3);{Multiple myeloma, resistance to}, 254500 (3).
VDRC has 2 RNAi stocks for FBgn0038035 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 14 of 4 1.50Up
Head69 54 of 4 1.20None
Eye62 14 of 4 1.05None
Thoracicoabdominal ganglion113 84 of 4 1.90Up
Salivary gland84 34 of 4 1.42Up
Crop124 64 of 4 2.10Up
Midgut53 04 of 4 0.90None
Tubule123 134 of 4 2.10Up
Hindgut95 54 of 4 1.60Up
Heart63 14 of 4 1.07None
Fat body114 74 of 4 1.92Up
Ovary82 34 of 4 1.40Up
Testis25 04 of 4 0.40Down
Male accessory glands166 64 of 4 2.80Up
Virgin spermatheca71 24 of 4 1.19None
Mated spermatheca90 64 of 4 1.52Up
Adult carcass76 24 of 4 1.30Up
Larval CNS103 54 of 4 1.74Up
Larval Salivary gland114 74 of 4 1.92Up
Larval midgut83 14 of 4 1.41Up
Larval tubule127 54 of 4 2.10Up
Larval hindgut121 24 of 4 2.03Up
Larval fat body148 124 of 4 2.50Up
Larval trachea93 124 of 4 1.56Up
Larval carcass94 14 of 4 1.58Up
S2 cells (growing)149 34 of 4 2.52Up
Whole fly59 44 of 4

Looking for CG17227-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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