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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17233-RC through 18771 annotations produced 1 hits



(CG17233):

Annotation Number : CG17233
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036958
Gbrowse : chr3L:20226274-20234618 (-) // 100.0 //
Probeset : 1634304_a_at
Accessions : protein= NP_649196; /// NP_730499; /// NP_730500;, nucleotide= NM_140939; /// NM_168836; /// NM_168837;
FlyMine data for FBgn0036958.
BioGrid reports that CG17233 interacts with CG31811 CG8893 CG9036 .
VDRC has 1 RNAi stocks for FBgn0036958 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain144 ± 34 of 4 1.10None
Head68 ± 04 of 4 0.50Down
Eye45 ± 14 of 4 0.35Down
Thoracicoabdominal ganglion112 ± 34 of 4 0.90None
Salivary gland85 ± 54 of 4 0.67Down
Crop98 ± 24 of 4 0.80None
Midgut72 ± 34 of 4 0.60Down
Tubule87 ± 34 of 4 0.70Down
Hindgut81 ± 54 of 4 0.60Down
Heart39 ± 44 of 4 0.31Down
Fat body50 ± 84 of 4 0.39Down
Ovary491 ± 84 of 4 3.90Up
Testis14 ± 14 of 4 0.10Down
Male accessory glands58 ± 34 of 4 0.50Down
Virgin spermatheca52 ± 84 of 4 0.41Down
Mated spermatheca52 ± 44 of 4 0.41Down
Adult carcass44 ± 74 of 4 0.40Down
Larval CNS207 ± 54 of 4 1.63Up
Larval Salivary gland102 ± 34 of 4 0.80None
Larval midgut53 ± 34 of 4 0.42Down
Larval tubule87 ± 44 of 4 0.70Down
Larval hindgut76 ± 74 of 4 0.60Down
Larval fat body59 ± 64 of 4 0.50Down
Larval trachea87 ± 54 of 4 0.69Down
Larval carcass75 ± 24 of 4 0.59Down
S2 cells (growing)122 ± 24 of 4 0.96None
Whole fly127 ± 94 of 4

Looking for CG17233-RC. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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