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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17239-RA through 18771 annotations produced 1 hits



(CG17239):

Annotation Number : CG17239
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042186
Gbrowse : chr2L:2251583-2252330 (-) // 100.0 //
Probeset : 1623756_at
Accessions : protein= NP_722784;, nucleotide= NM_164469;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0042186.
Homophila reports that CG17239 is a close match (7e-12) to human gene C1S (NP_958850), a gene associated with C1r/C1s deficiency, combined (1);C1s deficiency, isolated (3).
VDRC has 1 RNAi stocks for FBgn0042186 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 01 of 4 0.00Down
Head5 ± 11 of 4 0.00Down
Eye3 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion9 ± 12 of 4 0.10Down
Salivary gland25 ± 62 of 4 0.20Down
Crop5 ± 11 of 4 0.00Down
Midgut14 ± 13 of 4 0.10Down
Tubule11 ± 12 of 4 0.10Down
Hindgut13 ± 53 of 4 0.10Down
Heart5 ± 12 of 4 0.04Down
Fat body16 ± 134 of 4 0.13Down
Ovary5 ± 21 of 4 0.00Down
Testis4 ± 10 of 4 0.00Down
Male accessory glands14 ± 41 of 4 0.10Down
Virgin spermatheca6068 ± 2764 of 448.79Up
Mated spermatheca6410 ± 3534 of 451.53Up
Adult carcass46 ± 203 of 4 0.40Down
Larval CNS6 ± 23 of 4 0.05Down
Larval Salivary gland6 ± 11 of 4 0.05Down
Larval midgut20 ± 14 of 4 0.16Down
Larval tubule9 ± 11 of 4 0.10Down
Larval hindgut9 ± 04 of 4 0.07Down
Larval fat body10 ± 11 of 4 0.10Down
Larval trachea4 ± 22 of 4 0.04Down
Larval carcass6 ± 02 of 4 0.05Down
S2 cells (growing)5 ± 22 of 4 0.05Down
Whole fly124 ± 194 of 4

Looking for CG17239-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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