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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17256-RA through 18771 annotations produced 1 hits



Nek2 (Nek2):

Annotation Number : CG17256
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029970
Gbrowse : chrX:7783098-7785605 (-) // 100.0 //
Probeset : 1637523_at
Accessions : protein= NP_572415;, nucleotide= NM_132187;
Pathway : 0005813 // centrosome // inferred from direct assay /// 0030496 // midbody // inferred from direct assay
Interpro : 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase
FlyMine data for FBgn0029970.
BDGP gene expression has embryonic in situ data for Nek2: 48 pix of staining in 32 body parts.
Homophila reports that CG17256 is a close match (3e-11) to human gene SRK;STD;ZAP70 (NP_997402), a gene associated with Selective T-cell defect (3).
BioGrid reports that CG17256 interacts with CG6033 CG3193 .
TRiP has 2 RNAi stocks for FBgn0029970 available for purchase.
VDRC has 3 RNAi stocks for FBgn0029970 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.10Down
Head2 10 of 4 0.10Down
Eye3 10 of 4 0.09Down
Thoracicoabdominal ganglion2 10 of 4 0.10Down
Salivary gland9 50 of 4 0.21Down
Crop5 10 of 4 0.10Down
Midgut4 10 of 4 0.10Down
Tubule5 00 of 4 0.10Down
Hindgut8 20 of 4 0.20Down
Heart3 10 of 4 0.08Down
Fat body3 10 of 4 0.09Down
Ovary122 44 of 4 2.80Up
Testis4 00 of 4 0.10Down
Male accessory glands6 30 of 4 0.10Down
Virgin spermatheca5 20 of 4 0.11Down
Mated spermatheca5 00 of 4 0.13Down
Adult carcass6 10 of 4 0.10Down
Larval CNS15 24 of 4 0.36Down
Larval Salivary gland7 21 of 4 0.16Down
Larval midgut5 20 of 4 0.13Down
Larval tubule2 00 of 4 0.00Down
Larval hindgut5 10 of 4 0.13Down
Larval fat body5 10 of 4 0.10Down
Larval trachea10 12 of 4 0.24Down
Larval carcass12 00 of 4 0.28Down
S2 cells (growing)20 23 of 4 0.47Down
Whole fly43 34 of 4

Looking for CG17256-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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