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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17257-RB through 18771 annotations produced 1 hits



beta4GalNAcTB pilot (GABPI):

Annotation Number : CG17257
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031495
Gbrowse : chr2L:3030544-3032305 (+) // 100.0 //
Probeset : 1639579_s_at
Accessions : protein= NP_722869;, nucleotide= NM_164522;
Pathway : 0005794 // Golgi apparatus // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0031495.
BioGrid reports that CG17257 interacts with CG2052 CG6758 .
TRiP has 1 RNAi stocks for FBgn0031495 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031495 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain446 ± 84 of 4 3.80Up
Head170 ± 44 of 4 1.50Up
Eye169 ± 34 of 4 1.45Up
Thoracicoabdominal ganglion676 ± 264 of 4 5.80Up
Salivary gland148 ± 114 of 4 1.27None
Crop107 ± 54 of 4 0.90None
Midgut124 ± 54 of 4 1.10None
Tubule225 ± 94 of 4 1.90Up
Hindgut92 ± 14 of 4 0.80Down
Heart106 ± 54 of 4 0.91None
Fat body77 ± 44 of 4 0.66Down
Ovary145 ± 34 of 4 1.20Up
Testis118 ± 34 of 4 1.00None
Male accessory glands173 ± 124 of 4 1.50Up
Virgin spermatheca121 ± 24 of 4 1.04None
Mated spermatheca124 ± 34 of 4 1.06None
Adult carcass87 ± 84 of 4 0.70Down
Larval CNS205 ± 104 of 4 1.76Up
Larval Salivary gland136 ± 54 of 4 1.17None
Larval midgut125 ± 24 of 4 1.07None
Larval tubule134 ± 14 of 4 1.10None
Larval hindgut101 ± 24 of 4 0.87None
Larval fat body122 ± 94 of 4 1.00None
Larval trachea169 ± 84 of 4 1.45Up
Larval carcass99 ± 24 of 4 0.85None
S2 cells (growing)388 ± 94 of 4 3.32Up
Whole fly117 ± 74 of 4

Looking for CG17257-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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