FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG17259-RA through 18771 annotations produced 1 hits

seryl-tRNA synthetase (CG17259):

Annotation Number : CG17259
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031497
Gbrowse : chr2L:3035490-3037403 (-) // 100.0 //
Probeset : 1638642_at
Accessions : protein= NP_608743;, nucleotide= NM_134899;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0031497.
BioGrid reports that CG17259 interacts with CG18301 .
TRiP has 1 RNAi stocks for FBgn0031497 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	107 ± 2	4 of 4	0.30	Down
Head	215 ± 10	4 of 4	0.70	Down
Eye	112 ± 11	4 of 4	0.34	Down
Thoracicoabdominal ganglion	152 ± 3	4 of 4	0.50	Down
Salivary gland	937 ± 40	4 of 4	2.84	Up
Crop	264 ± 14	4 of 4	0.80	Down
Midgut	440 ± 16	4 of 4	1.30	Up
Tubule	466 ± 60	4 of 4	1.40	Up
Hindgut	249 ± 1	4 of 4	0.80	Down
Heart	245 ± 6	4 of 4	0.74	Down
Fat body	411 ± 66	4 of 4	1.25	None
Ovary	386 ± 7	4 of 4	1.20	Up
Testis	89 ± 3	4 of 4	0.30	Down
Male accessory glands	708 ± 15	4 of 4	2.10	Up
Virgin spermatheca	419 ± 25	4 of 4	1.27	Up
Mated spermatheca	550 ± 37	4 of 4	1.67	Up
Adult carcass	288 ± 17	4 of 4	0.90	None
Larval CNS	528 ± 47	4 of 4	1.60	Up
Larval Salivary gland	2180 ± 212	4 of 4	6.61	Up
Larval midgut	337 ± 25	4 of 4	1.02	None
Larval tubule	321 ± 1	4 of 4	1.00	None
Larval hindgut	407 ± 11	4 of 4	1.23	Up
Larval fat body	307 ± 33	4 of 4	0.90	None
Larval trachea	595 ± 102	4 of 4	1.81	Up
Larval carcass	622 ± 38	4 of 4	1.89	Up
S2 cells (growing)	978 ± 19	4 of 4	2.96	Up
Whole fly	330 ± 16	4 of 4

Looking for CG17259-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720