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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17260-RA through 18771 annotations produced 1 hits



(CG17260):

Annotation Number : CG17260
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031498
Gbrowse : chr2L:3037410-3038795 (+) // 100.0 //
Probeset : 1625081_at
Accessions : protein= NP_608744;, nucleotide= NM_134900;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0031498.
BDGP gene expression has embryonic in situ data for CG17260: 4 pix of staining in 1 body parts.
BioGrid reports that CG17260 interacts with CG18341 CG2184 CG8863 .
VDRC has 1 RNAi stocks for FBgn0031498 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 ± 24 of 4 0.60Down
Head47 ± 54 of 4 0.70Down
Eye72 ± 54 of 4 1.03None
Thoracicoabdominal ganglion51 ± 34 of 4 0.70Down
Salivary gland55 ± 83 of 4 0.78None
Crop56 ± 24 of 4 0.80Down
Midgut50 ± 44 of 4 0.70Down
Tubule26 ± 12 of 4 0.40Down
Hindgut63 ± 44 of 4 0.90None
Heart53 ± 34 of 4 0.75Down
Fat body59 ± 44 of 4 0.84Down
Ovary85 ± 14 of 4 1.20Up
Testis236 ± 144 of 4 3.30Up
Male accessory glands38 ± 14 of 4 0.50Down
Virgin spermatheca41 ± 24 of 4 0.58Down
Mated spermatheca35 ± 24 of 4 0.49Down
Adult carcass59 ± 64 of 4 0.80None
Larval CNS23 ± 54 of 4 0.33Down
Larval Salivary gland52 ± 64 of 4 0.74None
Larval midgut28 ± 24 of 4 0.40Down
Larval tubule39 ± 24 of 4 0.60Down
Larval hindgut39 ± 14 of 4 0.55Down
Larval fat body79 ± 234 of 4 1.10None
Larval trachea40 ± 74 of 4 0.56Down
Larval carcass40 ± 34 of 4 0.57Down
S2 cells (growing)42 ± 34 of 4 0.60Down
Whole fly71 ± 14 of 4

Looking for CG17260-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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