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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17261-RA through 18771 annotations produced 1 hits



(CG17261):

Annotation Number : CG17261
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031501
Gbrowse : chr2L:3042915-3043595 (+) // 100.0 //
Probeset : 1639712_at
Accessions : protein= NP_608747;, nucleotide= NM_134903;
FlyMine data for FBgn0031501.
VDRC has 1 RNAi stocks for FBgn0031501 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye2 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.01Down
Crop2 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart33 ± 63 of 4 0.13Down
Fat body24 ± 50 of 4 0.10Down
Ovary6 ± 20 of 4 0.00Down
Testis2355 ± 754 of 4 9.30Up
Male accessory glands16 ± 30 of 4 0.10Down
Virgin spermatheca26 ± 23 of 4 0.10Down
Mated spermatheca9 ± 10 of 4 0.04Down
Adult carcass16 ± 30 of 4 0.10Down
Larval CNS6 ± 10 of 4 0.03Down
Larval Salivary gland3 ± 10 of 4 0.01Down
Larval midgut1 ± 00 of 4 0.00Down
Larval tubule8 ± 00 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.01Down
Larval fat body263 ± 1074 of 4 1.00None
Larval trachea16 ± 211 of 4 0.06Down
Larval carcass4 ± 00 of 4 0.02Down
S2 cells (growing)2 ± 00 of 4 0.01Down
Whole fly254 ± 84 of 4

Looking for CG17261-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime