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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG17265-RA through 18771 annotations produced 1 hits


Annotation Number : CG17265
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031488
Gbrowse : chr2L:3013500-3016069 (+) // 100.0 //
Probeset : 1623810_at
Accessions : protein= NP_608734;, nucleotide= NM_134890;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031488.
BDGP gene expression has embryonic in situ data for CG17265: 46 pix of staining in 17 body parts.
BioGrid reports that CG17265 interacts with CG7281 CG8505 CG17265 CG18362 CG2925 CG30077 CG3081 CG31211 CG31291 CG3165 CG3613 CG3758 CG3880 CG4008 CG4198 CG4533 CG5105 CG5848 CG6758 CG6856 CG6985 CG7172 CG8173 .
TRiP has 1 RNAi stocks for FBgn0031488 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031488 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head21 14 of 4 1.10None
Eye60 34 of 4 3.14Up
Thoracicoabdominal ganglion5 10 of 4 0.30Down
Salivary gland3 10 of 4 0.18Down
Crop259 234 of 413.40Up
Midgut11 13 of 4 0.60Down
Tubule8 01 of 4 0.40Down
Hindgut51 24 of 4 2.70Up
Heart10 01 of 4 0.52Down
Fat body4 20 of 4 0.21Down
Ovary24 14 of 4 1.30Up
Testis20 14 of 4 1.10None
Male accessory glands8 20 of 4 0.40Down
Virgin spermatheca17 14 of 4 0.89None
Mated spermatheca15 24 of 4 0.80None
Adult carcass13 12 of 4 0.70Down
Larval CNS92 94 of 4 4.79Up
Larval Salivary gland22 33 of 4 1.16None
Larval midgut11 00 of 4 0.61Down
Larval tubule16 14 of 4 0.80None
Larval hindgut50 64 of 4 2.60Up
Larval fat body15 23 of 4 0.80None
Larval trachea270 364 of 413.94Up
Larval carcass41 14 of 4 2.16Up
S2 cells (growing)20 14 of 4 1.06None
Whole fly19 14 of 4

Looking for CG17265-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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