FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG17272-RA through 18771 annotations produced 1 hits

(CG17272):

Annotation Number : CG17272
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038830
Gbrowse : chr3R:16649027-16649945 (-) // 100.0 //
Probeset : 1625750_at
Accessions : protein= NP_650917;, nucleotide= NM_142660;
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0038830.
BDGP gene expression has embryonic in situ data for CG17272: 13 pix of staining in 9 body parts.
VDRC has 2 RNAi stocks for FBgn0038830 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	316 ± 13	4 of 4	1.10	None
Head	275 ± 12	4 of 4	1.00	None
Eye	308 ± 17	4 of 4	1.10	None
Thoracicoabdominal ganglion	412 ± 26	4 of 4	1.50	Up
Salivary gland	283 ± 18	4 of 4	1.01	None
Crop	192 ± 8	4 of 4	0.70	Down
Midgut	1126 ± 27	4 of 4	4.00	Up
Tubule	581 ± 12	4 of 4	2.10	Up
Hindgut	325 ± 14	4 of 4	1.20	None
Heart	246 ± 7	4 of 4	0.88	None
Fat body	301 ± 12	4 of 4	1.07	None
Ovary	406 ± 8	4 of 4	1.40	Up
Testis	78 ± 9	4 of 4	0.30	Down
Male accessory glands	1191 ± 54	4 of 4	4.20	Up
Virgin spermatheca	324 ± 5	4 of 4	1.16	None
Mated spermatheca	348 ± 22	4 of 4	1.24	None
Adult carcass	206 ± 16	4 of 4	0.70	Down
Larval CNS	490 ± 20	4 of 4	1.75	Up
Larval Salivary gland	339 ± 8	4 of 4	1.21	Up
Larval midgut	877 ± 17	4 of 4	3.12	Up
Larval tubule	649 ± 16	4 of 4	2.30	Up
Larval hindgut	447 ± 14	4 of 4	1.59	Up
Larval fat body	399 ± 39	4 of 4	1.40	None
Larval trachea	447 ± 31	4 of 4	1.59	Up
Larval carcass	263 ± 9	4 of 4	0.94	None
S2 cells (growing)	165 ± 3	4 of 4	0.59	Down
Whole fly	280 ± 16	4 of 4

Looking for CG17272-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720