FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG17275-RA through 18771 annotations produced 2 hits

CG17274 (Ir93a):

Annotation Number : CG17275
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259215
Gbrowse : chr3R:16685133-16685667 (-) // 100.0 //
Probeset : 1633165_at
Accessions : protein= NP_650923; /// NP_650924; /// NP_732567;, nucleotide= NM_142666; /// NM_142667; /// NM_142667; /// NM_169934;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from e
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activit
FlyMine data for FBgn0259215.
VDRC has 2 RNAi stocks for FBgn0259215 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.70	None
Head	0 ± 0	0 of 4	0.70	None
Eye	1 ± 0	0 of 4	1.09	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	1.40	None
Salivary gland	14 ± 3	0 of 4	10.61	Up
Crop	4 ± 1	0 of 4	3.30	None
Midgut	1 ± 0	0 of 4	0.80	None
Tubule	1 ± 0	0 of 4	0.70	Down
Hindgut	1 ± 0	0 of 4	1.00	None
Heart	0 ± 0	0 of 4	0.44	None
Fat body	1 ± 0	0 of 4	0.78	None
Ovary	1 ± 0	0 of 4	0.80	None
Testis	1 ± 0	0 of 4	1.00	None
Male accessory glands	1 ± 0	0 of 4	1.20	None
Virgin spermatheca	2 ± 1	0 of 4	1.48	None
Mated spermatheca	2 ± 1	0 of 4	1.74	None
Adult carcass	4 ± 3	0 of 4	3.50	None
Larval CNS	0 ± 0	0 of 4	0.54	None
Larval Salivary gland	2 ± 1	0 of 4	2.04	None
Larval midgut	2 ± 1	0 of 4	2.02	None
Larval tubule	1 ± 0	0 of 4	0.70	None
Larval hindgut	2 ± 0	0 of 4	1.69	None
Larval fat body	1 ± 0	0 of 4	1.00	None
Larval trachea	0 ± 0	0 of 4	0.61	None
Larval carcass	2 ± 0	0 of 4	1.56	None
S2 cells (growing)	2 ± 0	0 of 4	1.72	None
Whole fly	1 ± 0	0 of 4

CG17274 (Ir93a):

Annotation Number : CG17274
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259215
Gbrowse : chr3R:16677429-16680402 (-) // 100.0 //
Probeset : 1635505_a_at
Accessions : protein= NP_650923; /// NP_650924; /// NP_732567;, nucleotide= NM_142666; /// NM_142667; /// NM_142667; /// NM_169934;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from e
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activit
FlyMine data for FBgn0259215.
Homophila reports that CG17274 is a close match (4e-11) to human gene GLUR3;GRIA3;MRX94 (NP_015564), a gene associated with Mental retardation, X-linked 94, 300699 (3).
VDRC has 2 RNAi stocks for FBgn0259215 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	2.80	None
Head	0 ± 0	0 of 4	1.30	None
Eye	3 ± 1	0 of 4	7.35	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	1.60	None
Salivary gland	6 ± 2	0 of 4	15.59	None
Crop	1 ± 0	0 of 4	3.40	Up
Midgut	1 ± 0	0 of 4	3.20	None
Tubule	1 ± 0	0 of 4	2.90	Up
Hindgut	1 ± 0	0 of 4	2.60	Up
Heart	0 ± 0	0 of 4	1.47	None
Fat body	1 ± 0	0 of 4	3.35	Up
Ovary	0 ± 0	0 of 4	0.90	None
Testis	2 ± 1	0 of 4	6.50	None
Male accessory glands	3 ± 1	0 of 4	7.40	None
Virgin spermatheca	0 ± 0	0 of 4	1.88	None
Mated spermatheca	1 ± 0	0 of 4	2.59	None
Adult carcass	1 ± 0	0 of 4	2.20	Up
Larval CNS	0 ± 0	0 of 4	0.76	None
Larval Salivary gland	1 ± 0	0 of 4	2.41	Up
Larval midgut	1 ± 0	0 of 4	2.53	None
Larval tubule	0 ± 0	0 of 4	1.80	Up
Larval hindgut	1 ± 0	0 of 4	2.53	Up
Larval fat body	1 ± 0	0 of 4	3.10	None
Larval trachea	1 ± 1	0 of 4	3.71	None
Larval carcass	0 ± 0	0 of 4	1.35	None
S2 cells (growing)	0 ± 0	0 of 4	1.53	None
Whole fly	0 ± 0	0 of 4

Looking for CG17275-RA. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720