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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1728-RA through 18771 annotations produced 1 hits



Tim8 (Tim8):

Annotation Number : CG1728
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027359
Gbrowse : chrX:11262493-11263216 (+) // 100.0 //
Probeset : 1637967_at
Accessions : protein= NP_572713;, nucleotide= NM_132485;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0015450 // P-P-bond-hydrolysis-driven protein trans
FlyMine data for FBgn0027359.
Homophila reports that CG1728 is a close match (2e-14) to human gene DDP;DDP1;DFN1;MTS;TIMM8A (NP_004076), a gene associated with Deafness, X-linked 1, progressive (3);Jensen syndrome, 311150 (3);Mohr-Tranebjaerg syndrome, 304700 (3).
BioGrid reports that CG1728 interacts with CG30115 CG31211 .
TRiP has 1 RNAi stocks for FBgn0027359 available for purchase.
VDRC has 5 RNAi stocks for FBgn0027359 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain566 124 of 4 1.00None
Head423 184 of 4 0.70Down
Eye341 184 of 4 0.58Down
Thoracicoabdominal ganglion571 154 of 4 1.00None
Salivary gland507 114 of 4 0.85Down
Crop265 144 of 4 0.40Down
Midgut404 44 of 4 0.70Down
Tubule307 134 of 4 0.50Down
Hindgut332 84 of 4 0.60Down
Heart348 134 of 4 0.59Down
Fat body451 354 of 4 0.76Down
Ovary776 84 of 4 1.30Up
Testis646 84 of 4 1.10None
Male accessory glands448 194 of 4 0.80Down
Virgin spermatheca280 124 of 4 0.47Down
Mated spermatheca312 104 of 4 0.53Down
Adult carcass415 164 of 4 0.70Down
Larval CNS488 354 of 4 0.82Down
Larval Salivary gland771 244 of 4 1.30Up
Larval midgut291 304 of 4 0.49Down
Larval tubule192 54 of 4 0.30Down
Larval hindgut390 294 of 4 0.66Down
Larval fat body742 384 of 4 1.20Up
Larval trachea685 1294 of 4 1.15None
Larval carcass337 444 of 4 0.57Down
S2 cells (growing)423 94 of 4 0.71Down
Whole fly594 244 of 4

Looking for CG1728-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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