Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17280-RA through 18771 annotations produced 1 hits



CG17280 (levy):

Annotation Number : CG17280
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034877
Gbrowse : chr2R:19435762-19436505 (+) // 100.0 //
Probeset : 1633044_at
Accessions : protein= NP_611805;, nucleotide= NM_137961;
Pathway : cytochrome c to oxygen // inferred from mutant phenotype /// 0006123 // mitochondrial electron transport
Interpro : cytochrome c to oxygen // inferred from sequence or structural similarity /// 0008340 // determination of adult lifespa
FlyMine data for FBgn0034877.
BDGP gene expression has embryonic in situ data for CG17280: 13 pix of staining in 7 body parts.
VDRC has 2 RNAi stocks for FBgn0034877 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2219 684 of 4 0.90None
Head2852 984 of 4 1.20Up
Eye3593 1084 of 4 1.47Up
Thoracicoabdominal ganglion2870 784 of 4 1.20Up
Salivary gland3515 1264 of 4 1.43Up
Crop2675 1634 of 4 1.10None
Midgut3070 1294 of 4 1.30Up
Tubule4441 604 of 4 1.80Up
Hindgut3923 794 of 4 1.60Up
Heart3349 1474 of 4 1.37Up
Fat body3650 2374 of 4 1.49Up
Ovary1225 264 of 4 0.50Down
Testis457 194 of 4 0.20Down
Male accessory glands1622 454 of 4 0.70Down
Virgin spermatheca3346 1304 of 4 1.37Up
Mated spermatheca3311 1224 of 4 1.35Up
Adult carcass4835 2614 of 4 2.00Up
Larval CNS1742 324 of 4 0.71Down
Larval Salivary gland2540 584 of 4 1.04None
Larval midgut3332 614 of 4 1.36Up
Larval tubule2802 2224 of 4 1.10None
Larval hindgut3648 664 of 4 1.49Up
Larval fat body1626 1284 of 4 0.70Down
Larval trachea1968 724 of 4 0.80Down
Larval carcass3230 2804 of 4 1.32None
S2 cells (growing)1267 404 of 4 0.52Down
Whole fly2450 704 of 4

Looking for CG17280-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime