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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17284-RA through 18771 annotations produced 1 hits



Odorant-binding protein 93a (Obp93a):

Annotation Number : CG17284
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038859
Gbrowse : chr3R:16954671-16955439 (-) // 100.0 //
Probeset : 1629672_at
Accessions : protein= NP_650945; /// NP_996254;, nucleotide= NM_142688; /// NM_206532;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005549 // odorant binding // inferred from ele
FlyMine data for FBgn0038859.
VDRC has 3 RNAi stocks for FBgn0038859 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.40None
Head2 ± 10 of 4 0.50None
Eye4 ± 11 of 4 0.80None
Thoracicoabdominal ganglion3 ± 10 of 4 0.70None
Salivary gland4 ± 10 of 4 0.90None
Crop4 ± 00 of 4 0.80None
Midgut2 ± 10 of 4 0.60None
Tubule5 ± 00 of 4 1.00None
Hindgut5 ± 10 of 4 1.00None
Heart3 ± 10 of 4 0.67None
Fat body6 ± 11 of 4 1.37None
Ovary2 ± 00 of 4 0.60None
Testis25 ± 14 of 4 5.00Up
Male accessory glands7 ± 10 of 4 1.50None
Virgin spermatheca4 ± 21 of 4 0.93None
Mated spermatheca2 ± 10 of 4 0.53None
Adult carcass5 ± 10 of 4 1.10None
Larval CNS2 ± 00 of 4 0.53None
Larval Salivary gland6 ± 10 of 4 1.36None
Larval midgut5 ± 10 of 4 1.08None
Larval tubule4 ± 01 of 4 1.00None
Larval hindgut4 ± 00 of 4 0.86None
Larval fat body7 ± 10 of 4 1.50None
Larval trachea3 ± 21 of 4 0.72None
Larval carcass5 ± 00 of 4 1.03None
S2 cells (growing)3 ± 11 of 4 0.60None
Whole fly5 ± 10 of 4

Looking for CG17284-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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