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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17286-RA through 18771 annotations produced 1 hits



CG17286 (spd-2):

Annotation Number : CG17286
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027500
Gbrowse : chr3L:16584305-16588142 (-) // 100.0 // /// chr3L:16594188-16595808 (-) // 39.68 //
Probeset : 1631543_at
Accessions : protein= NP_648906;, nucleotide= NM_140649;
Pathway : 0005813 // centrosome // inferred from direct assay /// 0005814 // centriole // inferred from direct assay
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0027500.
BioGrid reports that CG17286 interacts with CG30115 CG9188 .
VDRC has 3 RNAi stocks for FBgn0027500 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.00Down
Head9 10 of 4 0.00Down
Eye5 10 of 4 0.02Down
Thoracicoabdominal ganglion5 20 of 4 0.00Down
Salivary gland4 10 of 4 0.01Down
Crop10 20 of 4 0.00Down
Midgut25 40 of 4 0.10Down
Tubule16 50 of 4 0.00Down
Hindgut15 10 of 4 0.00Down
Heart3 10 of 4 0.01Down
Fat body9 80 of 4 0.03Down
Ovary902 174 of 4 2.50Up
Testis178 54 of 4 0.50Down
Male accessory glands18 70 of 4 0.00Down
Virgin spermatheca15 20 of 4 0.04Down
Mated spermatheca12 20 of 4 0.03Down
Adult carcass29 80 of 4 0.10Down
Larval CNS213 64 of 4 0.58Down
Larval Salivary gland26 34 of 4 0.07Down
Larval midgut25 20 of 4 0.07Down
Larval tubule15 11 of 4 0.00Down
Larval hindgut26 23 of 4 0.07Down
Larval fat body41 83 of 4 0.10Down
Larval trachea70 74 of 4 0.19Down
Larval carcass46 54 of 4 0.13Down
S2 cells (growing)173 54 of 4 0.47Down
Whole fly366 474 of 4

Looking for CG17286-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime