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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17290-RA through 18771 annotations produced 1 hits



(CG17290):

Annotation Number : CG17290
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034201
Gbrowse : chr2R:13042203-13042811 (+) // 99.23 //
Probeset : 1625558_a_at
Accessions : protein= NP_611196;, nucleotide= NM_137352;
FlyMine data for FBgn0034201.
BDGP gene expression has embryonic in situ data for CG17290: 2 pix of staining in 1 body parts.
BioGrid reports that CG17290 interacts with CG4900 CG4216 CG9776 .
VDRC has 4 RNAi stocks for FBgn0034201 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00None
Head5 ± 02 of 4 0.20None
Eye1 ± 00 of 4 0.05None
Thoracicoabdominal ganglion0 ± 00 of 4 0.00None
Salivary gland7 ± 40 of 4 0.21None
Crop3 ± 10 of 4 0.10None
Midgut5 ± 12 of 4 0.20None
Tubule3 ± 10 of 4 0.10Down
Hindgut5 ± 01 of 4 0.10None
Heart3 ± 11 of 4 0.08None
Fat body4 ± 11 of 4 0.13None
Ovary1 ± 00 of 4 0.00None
Testis9 ± 23 of 4 0.30None
Male accessory glands3 ± 10 of 4 0.10None
Virgin spermatheca0 ± 00 of 4 0.02None
Mated spermatheca1 ± 10 of 4 0.04None
Adult carcass3 ± 10 of 4 0.10None
Larval CNS2 ± 11 of 4 0.06None
Larval Salivary gland3 ± 00 of 4 0.10None
Larval midgut3 ± 01 of 4 0.10None
Larval tubule3 ± 00 of 4 0.10None
Larval hindgut4 ± 03 of 4 0.11None
Larval fat body3 ± 10 of 4 0.10None
Larval trachea2 ± 10 of 4 0.08None
Larval carcass11 ± 52 of 4 0.31None
S2 cells (growing)1 ± 00 of 4 0.04None
Whole fly36 ± 154 of 4

Looking for CG17290-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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