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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17293-RA through 18771 annotations produced 1 hits



(CG17293):

Annotation Number : CG17293
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032030
Gbrowse : chr2L:8374480-8375549 (+) // 100.0 //
Probeset : 1627048_at
Accessions : protein= NP_609217;, nucleotide= NM_135373;
Pathway : 0008352 // katanin complex // inferred from sequence or structural similarity
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032030.
Homophila reports that CG17293 is a close match (5e-11) to human gene GNB3 (NP_002066), a gene associated with {Hypertension, essential, susceptibility to}, 145500 (3).
BioGrid reports that CG17293 interacts with CG6222 CG9330 .
TRiP has 1 RNAi stocks for FBgn0032030 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032030 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain209 ± 34 of 4 1.20Up
Head164 ± 34 of 4 0.90None
Eye291 ± 64 of 4 1.63Up
Thoracicoabdominal ganglion236 ± 114 of 4 1.30Up
Salivary gland301 ± 114 of 4 1.69Up
Crop177 ± 124 of 4 1.00None
Midgut134 ± 43 of 4 0.80Down
Tubule165 ± 74 of 4 0.90None
Hindgut145 ± 14 of 4 0.80Down
Heart178 ± 24 of 4 1.00None
Fat body136 ± 124 of 4 0.76Down
Ovary330 ± 44 of 4 1.90Up
Testis96 ± 14 of 4 0.50Down
Male accessory glands284 ± 154 of 4 1.60Up
Virgin spermatheca176 ± 54 of 4 0.99None
Mated spermatheca188 ± 104 of 4 1.06None
Adult carcass121 ± 44 of 4 0.70Down
Larval CNS396 ± 104 of 4 2.22Up
Larval Salivary gland376 ± 104 of 4 2.11Up
Larval midgut135 ± 74 of 4 0.76Down
Larval tubule198 ± 54 of 4 1.10None
Larval hindgut164 ± 104 of 4 0.92None
Larval fat body200 ± 114 of 4 1.10None
Larval trachea301 ± 84 of 4 1.69Up
Larval carcass159 ± 94 of 4 0.89None
S2 cells (growing)303 ± 54 of 4 1.70Up
Whole fly178 ± 84 of 4

Looking for CG17293-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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