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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1732-RA through 18771 annotations produced 1 hits



(CG1732):

Annotation Number : CG1732
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039915
Gbrowse : chr4:650318-655263 (+) // 100.0 //
Probeset : 1633033_s_at
Accessions : protein= NP_651930; /// NP_726594;, nucleotide= NM_143673; /// NM_166779;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral to plasma membrane // inferred from ele
Interpro : 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0005332 // gamma-aminob
FlyMine data for FBgn0039915.
BDGP gene expression has embryonic in situ data for CG1732: 32 pix of staining in 4 body parts.
Homophila reports that CG1732 is a close match (1e-67) to human gene HND;SLC6A19 (NP_001003841), a gene associated with Hartnup disorder, 234500 (3).
TRiP has 1 RNAi stocks for FBgn0039915 available for purchase.
VDRC has 4 RNAi stocks for FBgn0039915 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain780 ± 434 of 432.50Up
Head331 ± 464 of 413.80Up
Eye29 ± 34 of 4 1.24None
Thoracicoabdominal ganglion1426 ± 724 of 459.40Up
Salivary gland15 ± 12 of 4 0.62Down
Crop6 ± 13 of 4 0.30Down
Midgut3 ± 10 of 4 0.10Down
Tubule5 ± 00 of 4 0.20Down
Hindgut7 ± 11 of 4 0.30Down
Heart8 ± 04 of 4 0.35Down
Fat body14 ± 73 of 4 0.61None
Ovary2 ± 10 of 4 0.10Down
Testis5 ± 01 of 4 0.20Down
Male accessory glands82 ± 54 of 4 3.40Up
Virgin spermatheca4 ± 20 of 4 0.20Down
Mated spermatheca5 ± 11 of 4 0.23Down
Adult carcass18 ± 24 of 4 0.80None
Larval CNS408 ± 854 of 417.01Up
Larval Salivary gland6 ± 21 of 4 0.26Down
Larval midgut1 ± 00 of 4 0.05Down
Larval tubule4 ± 11 of 4 0.20Down
Larval hindgut4 ± 03 of 4 0.19Down
Larval fat body413 ± 774 of 417.20Up
Larval trachea3 ± 20 of 4 0.14Down
Larval carcass5 ± 02 of 4 0.21Down
S2 cells (growing)4 ± 12 of 4 0.18Down
Whole fly24 ± 14 of 4

Looking for CG1732-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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