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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17326-RA through 18771 annotations produced 1 hits



chr2R:6876909-6879085 (-) // 100.0 // (luna):

Annotation Number : CG17326
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1632074_at
Accessions : protein= , nucleotide= NP_995811;
Pathway : "0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from sequence or structural similarity /// 0045449 // regulation of transcription // non-trac
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 04 of 4 2.60Up
Head24 12 of 4 1.50Up
Eye16 02 of 4 0.96None
Thoracicoabdominal ganglion41 24 of 4 2.50Up
Salivary gland26 50 of 4 1.59None
Crop27 03 of 4 1.60Up
Midgut16 10 of 4 1.00None
Tubule6 10 of 4 0.40Down
Hindgut20 10 of 4 1.20None
Heart19 22 of 4 1.16None
Fat body26 61 of 4 1.60None
Ovary11 10 of 4 0.70Down
Testis13 03 of 4 0.80Down
Male accessory glands41 21 of 4 2.50Up
Virgin spermatheca13 10 of 4 0.81None
Mated spermatheca15 20 of 4 0.91None
Adult carcass28 30 of 4 1.70Up
Larval CNS36 44 of 4 2.21Up
Larval Salivary gland34 24 of 4 2.09Up
Larval midgut28 10 of 4 1.72Up
Larval tubule19 10 of 4 1.20None
Larval hindgut23 10 of 4 1.43Up
Larval fat body38 10 of 4 2.30Up
Larval trachea38 54 of 4 2.30Up
Larval carcass25 10 of 4 1.54Up
S2 cells (growing)96 14 of 4 5.81Up
Whole fly16 01 of 4

Looking for CG17326-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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