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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17329-RA through 18771 annotations produced 1 hits



(CG17329):

Annotation Number : CG17329
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028896
Gbrowse : chr2L:16291283-16291956 (+) // 100.0 //
Probeset : 1636996_at
Accessions : protein= NP_609784;, nucleotide= NM_135940;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0028896.
BDGP gene expression has embryonic in situ data for BG:DS02740.5: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0028896 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head1 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.10Down
Salivary gland5 ± 30 of 4 0.15Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut4 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.03Down
Fat body2 ± 00 of 4 0.05Down
Ovary1 ± 00 of 4 0.00Down
Testis451 ± 194 of 411.40Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.03Down
Mated spermatheca1 ± 00 of 4 0.04Down
Adult carcass5 ± 20 of 4 0.10Down
Larval CNS3 ± 10 of 4 0.10Down
Larval Salivary gland3 ± 10 of 4 0.09Down
Larval midgut1 ± 00 of 4 0.04Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.05Down
Larval fat body83 ± 343 of 4 2.10None
Larval trachea4 ± 30 of 4 0.12Down
Larval carcass1 ± 00 of 4 0.04Down
S2 cells (growing)4 ± 00 of 4 0.12Down
Whole fly39 ± 24 of 4

Looking for CG17329-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime