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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17333-RA through 18771 annotations produced 1 hits



(CG17333):

Annotation Number : CG17333
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030239
Gbrowse : chrX:10741532-10742514 (+) // 100.0 //
Probeset : 1636351_at
Accessions : protein= NP_572656;, nucleotide= NM_132428;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation /// 0017057 // 6-phosphogluconolactonase activity /
FlyMine data for FBgn0030239.
BDGP gene expression has embryonic in situ data for CG17333: 4 pix of staining in 1 body parts.
Homophila reports that CG17333 is a close match (3e-20) to human gene G6PDH;GDH;H6PD (NP_004276), a gene associated with Cortisone reductase deficiency, 604931 (3).
VDRC has 1 RNAi stocks for FBgn0030239 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain51 ± 24 of 4 0.20Down
Head431 ± 204 of 4 1.40Up
Eye258 ± 204 of 4 0.83None
Thoracicoabdominal ganglion62 ± 34 of 4 0.20Down
Salivary gland212 ± 94 of 4 0.68Down
Crop837 ± 294 of 4 2.70Up
Midgut490 ± 194 of 4 1.60Up
Tubule459 ± 54 of 4 1.50Up
Hindgut637 ± 124 of 4 2.00Up
Heart881 ± 324 of 4 2.83Up
Fat body1286 ± 1914 of 4 4.13Up
Ovary360 ± 104 of 4 1.20Up
Testis190 ± 154 of 4 0.60Down
Male accessory glands257 ± 124 of 4 0.80Down
Virgin spermatheca806 ± 384 of 4 2.59Up
Mated spermatheca635 ± 434 of 4 2.04Up
Adult carcass759 ± 234 of 4 2.40Up
Larval CNS142 ± 44 of 4 0.46Down
Larval Salivary gland291 ± 124 of 4 0.94None
Larval midgut259 ± 94 of 4 0.83Down
Larval tubule292 ± 54 of 4 0.90None
Larval hindgut230 ± 74 of 4 0.74Down
Larval fat body646 ± 534 of 4 2.10Up
Larval trachea272 ± 114 of 4 0.88None
Larval carcass144 ± 104 of 4 0.46Down
S2 cells (growing)267 ± 24 of 4 0.86Down
Whole fly311 ± 134 of 4

Looking for CG17333-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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