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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG17341-RA through 18771 annotations produced 1 hits


Annotation Number : CG17341
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028906
Gbrowse : chr2L:14156325-14159075 (+) // 100.0 //
Probeset : 1637779_at
Accessions : protein= NP_609703;, nucleotide= NM_135859;
FlyMine data for FBgn0028906.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 53 of 411.10Up
Head1 00 of 4 0.80None
Eye0 00 of 4 0.29None
Thoracicoabdominal ganglion22 82 of 4 9.90None
Salivary gland2 00 of 4 1.00None
Crop1 00 of 4 0.60None
Midgut2 00 of 4 1.30None
Tubule1 00 of 4 0.80None
Hindgut2 10 of 4 1.30None
Heart2 10 of 4 1.30None
Fat body2 20 of 4 1.17None
Ovary5 10 of 4 2.20None
Testis1 00 of 4 0.60None
Male accessory glands6 20 of 4 3.10None
Virgin spermatheca1 00 of 4 0.84None
Mated spermatheca2 00 of 4 1.03None
Adult carcass3 00 of 4 1.70None
Larval CNS25 53 of 411.25Up
Larval Salivary gland2 00 of 4 1.03None
Larval midgut4 10 of 4 2.15None
Larval tubule1 00 of 4 0.60None
Larval hindgut1 00 of 4 0.70None
Larval fat body2 00 of 4 1.20None
Larval trachea1 10 of 4 0.71None
Larval carcass2 00 of 4 0.98None
S2 cells (growing)3 00 of 4 1.65None
Whole fly2 00 of 4

Looking for CG17341-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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