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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17343-RA through 18771 annotations produced 1 hits



(CG17343):

Annotation Number : CG17343
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032751
Gbrowse : chr2L:19064992-19065247 (+) // 100.0 //
Probeset : 1641596_at
Accessions : protein= NP_609940;, nucleotide= NM_136096;
FlyMine data for FBgn0032751.
VDRC has 3 RNAi stocks for FBgn0032751 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 04 of 4 1.20None
Head10 10 of 4 0.60Down
Eye15 14 of 4 0.93None
Thoracicoabdominal ganglion10 20 of 4 0.60None
Salivary gland7 20 of 4 0.46Down
Crop7 20 of 4 0.50Down
Midgut2 00 of 4 0.20Down
Tubule5 10 of 4 0.30Down
Hindgut3 00 of 4 0.20Down
Heart13 12 of 4 0.80None
Fat body2 10 of 4 0.18Down
Ovary46 24 of 4 2.80Up
Testis40 34 of 4 2.40Up
Male accessory glands3 00 of 4 0.20Down
Virgin spermatheca3 00 of 4 0.22Down
Mated spermatheca4 00 of 4 0.24Down
Adult carcass5 00 of 4 0.30Down
Larval CNS127 34 of 4 7.69Up
Larval Salivary gland25 20 of 4 1.54Up
Larval midgut5 20 of 4 0.33Down
Larval tubule24 32 of 4 1.50None
Larval hindgut4 10 of 4 0.28Down
Larval fat body42 23 of 4 2.60Up
Larval trachea42 44 of 4 2.57Up
Larval carcass17 40 of 4 1.08None
S2 cells (growing)33 14 of 4 2.04Up
Whole fly16 13 of 4

Looking for CG17343-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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