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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17352-RA through 18771 annotations produced 1 hits



(CG17352):

Annotation Number : CG17352
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035880
Gbrowse : chr3L:8345454-8349396 (-) // 100.0 //
Probeset : 1634988_a_at
Accessions : protein= NP_001033995; /// NP_001097550; /// NP_648214; /// NP_729364; /// NP_729365;, nucleotide= NM_001038906; /// NM_001104080; /// NM_139957; /// NM_168263; /// NM_168264;
FlyMine data for FBgn0035880.
VDRC has 2 RNAi stocks for FBgn0035880 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 54 of 4 1.10None
Head491 194 of 412.30Up
Eye2416 2914 of 460.67Up
Thoracicoabdominal ganglion18 14 of 4 0.50Down
Salivary gland17 50 of 4 0.43Down
Crop23 14 of 4 0.60Down
Midgut12 10 of 4 0.30Down
Tubule27 04 of 4 0.70Down
Hindgut21 03 of 4 0.50Down
Heart32 74 of 4 0.82None
Fat body41 64 of 4 1.05None
Ovary9 01 of 4 0.20Down
Testis14 21 of 4 0.40Down
Male accessory glands10 20 of 4 0.30Down
Virgin spermatheca37 34 of 4 0.94None
Mated spermatheca23 34 of 4 0.58Down
Adult carcass22 21 of 4 0.60Down
Larval CNS11 14 of 4 0.30Down
Larval Salivary gland21 13 of 4 0.53Down
Larval midgut10 10 of 4 0.26Down
Larval tubule11 01 of 4 0.30Down
Larval hindgut16 03 of 4 0.41Down
Larval fat body17 42 of 4 0.40Down
Larval trachea48 614 of 4 1.22None
Larval carcass23 32 of 4 0.58Down
S2 cells (growing)9 00 of 4 0.25Down
Whole fly39 34 of 4

Looking for CG17352-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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