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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1737-RA through 18771 annotations produced 1 hits



(CG1737):

Annotation Number : CG1737
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030293
Gbrowse : chrX:11244666-11249331 (+) // 100.0 //
Probeset : 1628109_at
Accessions : protein= NP_572711;, nucleotide= NM_132483;
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0030293.
BioGrid reports that CG1737 interacts with CG5009 .
VDRC has 2 RNAi stocks for FBgn0030293 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain207 ± 34 of 4 1.20None
Head123 ± 24 of 4 0.70None
Eye82 ± 24 of 4 0.47Down
Thoracicoabdominal ganglion119 ± 14 of 4 0.70Down
Salivary gland179 ± 114 of 4 1.03None
Crop96 ± 34 of 4 0.60Down
Midgut79 ± 34 of 4 0.50Down
Tubule86 ± 24 of 4 0.50Down
Hindgut93 ± 64 of 4 0.50Down
Heart48 ± 24 of 4 0.28Down
Fat body92 ± 84 of 4 0.53Down
Ovary473 ± 54 of 4 2.70Up
Testis16 ± 14 of 4 0.10Down
Male accessory glands120 ± 04 of 4 0.70Down
Virgin spermatheca62 ± 24 of 4 0.36Down
Mated spermatheca75 ± 24 of 4 0.43Down
Adult carcass102 ± 44 of 4 0.60Down
Larval CNS329 ± 564 of 4 1.88Up
Larval Salivary gland357 ± 224 of 4 2.04Up
Larval midgut112 ± 54 of 4 0.64Down
Larval tubule74 ± 24 of 4 0.40Down
Larval hindgut150 ± 14 of 4 0.86None
Larval fat body102 ± 24 of 4 0.60Down
Larval trachea151 ± 184 of 4 0.87None
Larval carcass115 ± 44 of 4 0.66Down
S2 cells (growing)179 ± 74 of 4 1.03None
Whole fly175 ± 164 of 4

Looking for CG1737-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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