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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG17375-RA through 18771 annotations produced 1 hits


Annotation Number : CG17375
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031861
Gbrowse : chr2L:6804618-6805792 (-) // 100.0 //
Probeset : 1625526_at
Accessions : protein= NP_609076;, nucleotide= NM_135232;
FlyMine data for FBgn0031861.
BDGP gene expression has embryonic in situ data for CG17375: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0031861 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10Down
Head1 00 of 4 0.00Down
Eye0 00 of 4 0.01Down
Thoracicoabdominal ganglion8 10 of 4 0.20Down
Salivary gland16 10 of 4 0.37Down
Crop5 10 of 4 0.10Down
Midgut12 00 of 4 0.30Down
Tubule5 00 of 4 0.10Down
Hindgut7 00 of 4 0.20Down
Heart2 10 of 4 0.07Down
Fat body6 40 of 4 0.15Down
Ovary4 00 of 4 0.10Down
Testis538 254 of 412.40Up
Male accessory glands6 30 of 4 0.10Down
Virgin spermatheca8 11 of 4 0.20Down
Mated spermatheca9 20 of 4 0.21Down
Adult carcass14 30 of 4 0.30Down
Larval CNS4 30 of 4 0.11Down
Larval Salivary gland4 10 of 4 0.10Down
Larval midgut11 10 of 4 0.26Down
Larval tubule5 10 of 4 0.10Down
Larval hindgut5 00 of 4 0.11Down
Larval fat body45 172 of 4 1.10None
Larval trachea3 50 of 4 0.08Down
Larval carcass6 10 of 4 0.14Down
S2 cells (growing)3 00 of 4 0.07Down
Whole fly43 24 of 4

Looking for CG17375-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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