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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17385-RA through 18771 annotations produced 1 hits



(CG17385):

Annotation Number : CG17385
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033934
Gbrowse : chr2R:10297715-10298916 (-) // 100.0 //
Probeset : 1637583_at
Accessions : protein= NP_610962;, nucleotide= NM_137118;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0033934.
Homophila reports that CG17385 is a close match (7e-11) to human gene HSAL4;SALL4 (NP_065169), a gene associated with Duane-radial ray syndrome, 607323 (3);IVIC syndrome, 147750 (3).
BioGrid reports that CG17385 interacts with CG8701 .
TRiP has 2 RNAi stocks for FBgn0033934 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033934 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain394 ± 94 of 4 1.10Up
Head344 ± 204 of 4 1.00None
Eye422 ± 124 of 4 1.22Up
Thoracicoabdominal ganglion399 ± 94 of 4 1.20Up
Salivary gland489 ± 184 of 4 1.42Up
Crop460 ± 134 of 4 1.30Up
Midgut278 ± 114 of 4 0.80Down
Tubule208 ± 104 of 4 0.60Down
Hindgut359 ± 144 of 4 1.00None
Heart315 ± 144 of 4 0.91None
Fat body204 ± 214 of 4 0.59Down
Ovary477 ± 84 of 4 1.40Up
Testis186 ± 74 of 4 0.50Down
Male accessory glands436 ± 94 of 4 1.30Up
Virgin spermatheca130 ± 54 of 4 0.38Down
Mated spermatheca125 ± 44 of 4 0.36Down
Adult carcass294 ± 14 of 4 0.90Down
Larval CNS503 ± 314 of 4 1.46Up
Larval Salivary gland240 ± 74 of 4 0.70Down
Larval midgut191 ± 64 of 4 0.55Down
Larval tubule307 ± 154 of 4 0.90None
Larval hindgut307 ± 224 of 4 0.89None
Larval fat body256 ± 104 of 4 0.70Down
Larval trachea510 ± 224 of 4 1.48Up
Larval carcass304 ± 104 of 4 0.88Down
S2 cells (growing)554 ± 154 of 4 1.61Up
Whole fly344 ± 114 of 4

Looking for CG17385-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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