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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG17387-RA through 18771 annotations produced 1 hits


(CG17387):

Annotation Number : CG17387
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037276
Gbrowse : chr3R:606992-610433 (-) // 100.0 //
Probeset : 1636580_at
Accessions : protein= NP_649495;, nucleotide= NM_141238;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation
FlyMine data for FBgn0037276.
VDRC has 3 RNAi stocks for FBgn0037276 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.20Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.08Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland7 ± 20 of 4 0.38Down
Crop3 ± 10 of 4 0.20Down
Midgut1 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.10Down
Heart2 ± 10 of 4 0.15Down
Fat body1 ± 10 of 4 0.07Down
Ovary1 ± 00 of 4 0.10Down
Testis316 ± 124 of 416.00Up
Male accessory glands13 ± 12 of 4 0.70Down
Virgin spermatheca2 ± 00 of 4 0.13Down
Mated spermatheca1 ± 00 of 4 0.06Down
Adult carcass3 ± 20 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.09Down
Larval Salivary gland3 ± 10 of 4 0.17Down
Larval midgut1 ± 00 of 4 0.09Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.09Down
Larval fat body30 ± 163 of 4 1.60None
Larval trachea0 ± 00 of 4 0.05Down
Larval carcass0 ± 00 of 4 0.05Down
S2 cells (growing)1 ± 00 of 4 0.06Down
Whole fly19 ± 14 of 4

Looking for CG17387-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime