FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG17419-RB through 18771 annotations produced 1 hits

(CG41099):

Annotation Number : CG17419
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039955
Gbrowse : chr3RHet:1685101-1706064 (-) // 100.0 //
Probeset : 1641379_a_at
Accessions : protein= NP_001015359; /// NP_001015360; /// NP_001104450; /// NP_001104451;, nucleotide= NM_001015359; /// NM_001015360; /// NM_001110980; /// NM_001110981;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0039955.
BDGP gene expression has embryonic in situ data for CG17419: 13 pix of staining in 6 body parts.
TRiP has 1 RNAi stocks for FBgn0039955 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039955 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	396 ± 8	4 of 4	1.30	Up
Head	198 ± 7	4 of 4	0.70	Down
Eye	240 ± 8	4 of 4	0.80	Down
Thoracicoabdominal ganglion	456 ± 12	4 of 4	1.50	Up
Salivary gland	371 ± 24	4 of 4	1.24	None
Crop	219 ± 8	4 of 4	0.70	Down
Midgut	324 ± 14	4 of 4	1.10	None
Tubule	577 ± 23	4 of 4	1.90	Up
Hindgut	259 ± 6	4 of 4	0.90	Down
Heart	139 ± 1	4 of 4	0.46	Down
Fat body	181 ± 7	4 of 4	0.61	Down
Ovary	698 ± 11	4 of 4	2.30	Up
Testis	164 ± 4	4 of 4	0.50	Down
Male accessory glands	365 ± 10	4 of 4	1.20	Up
Virgin spermatheca	203 ± 7	4 of 4	0.68	Down
Mated spermatheca	254 ± 3	4 of 4	0.85	Down
Adult carcass	152 ± 2	4 of 4	0.50	Down
Larval CNS	421 ± 26	4 of 4	1.41	Up
Larval Salivary gland	344 ± 6	4 of 4	1.15	Up
Larval midgut	247 ± 8	4 of 4	0.82	Down
Larval tubule	399 ± 6	4 of 4	1.30	Up
Larval hindgut	309 ± 11	4 of 4	1.03	None
Larval fat body	223 ± 6	4 of 4	0.70	Down
Larval trachea	251 ± 16	4 of 4	0.84	Down
Larval carcass	268 ± 2	4 of 4	0.90	Down
S2 cells (growing)	181 ± 1	4 of 4	0.61	Down
Whole fly	300 ± 8	4 of 4

Looking for CG17419-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720