Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1742-RB through 18771 annotations produced 2 hits



/// Microsomal glutathione S-transferase-like (CG7546 /// Mgstl):

Annotation Number : CG1742
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025814
Gbrowse : chrX:20913515-20915141 (+) // 100.0 //
Probeset : 1627643_at
Accessions : protein= NP_524696; /// NP_728382;, nucleotide= NM_079957; /// NM_167724;
Pathway : 0005741 // mitochondrial outer membrane // inferred from sequence or structural similarity /// 0005792 // microsome // i
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0025814.
BDGP gene expression has embryonic in situ data for Mgstl: 11 pix of staining in 4 body parts.
VDRC has 3 RNAi stocks for FBgn0025814 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 14 of 4 0.30None
Head275 594 of 4 6.90Up
Eye212 154 of 4 5.33Up
Thoracicoabdominal ganglion10 02 of 4 0.30None
Salivary gland10 21 of 4 0.25None
Crop9 01 of 4 0.20None
Midgut62 64 of 4 1.60None
Tubule11 10 of 4 0.30Down
Hindgut133 44 of 4 3.30Up
Heart103 204 of 4 2.60Up
Fat body109 524 of 4 2.75None
Ovary3 10 of 4 0.10None
Testis4 10 of 4 0.10None
Male accessory glands14 51 of 4 0.40None
Virgin spermatheca14 14 of 4 0.37None
Mated spermatheca9 12 of 4 0.23None
Adult carcass257 524 of 4 6.50Up
Larval CNS1 20 of 4 0.04Down
Larval Salivary gland1 00 of 4 0.04Down
Larval midgut4 10 of 4 0.10None
Larval tubule3 10 of 4 0.10None
Larval hindgut0 00 of 4 0.02Down
Larval fat body10 20 of 4 0.30None
Larval trachea3 21 of 4 0.08None
Larval carcass2 00 of 4 0.06Down
S2 cells (growing)2 10 of 4 0.07None
Whole fly39 114 of 4



Microsomal glutathione S-transferase-like (Mgstl):

Annotation Number : CG1742
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025814 /// FBgn0042701
Gbrowse : chrX:20914098-20915141 (+) // 100.0 //
Probeset : 1631058_s_at
Accessions : protein= NP_524696; /// NP_728382;, nucleotide= NM_079957; /// NM_167724;
Pathway : 0005741 // mitochondrial outer membrane // inferred from sequence or structural similarity /// 0005792 // microsome // i
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0025814 /// FBgn0042701.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain497 114 of 4 0.50Down
Head1491 1014 of 4 1.60Up
Eye1093 864 of 4 1.16None
Thoracicoabdominal ganglion561 114 of 4 0.60Down
Salivary gland302 234 of 4 0.32Down
Crop2394 864 of 4 2.50Up
Midgut1367 444 of 4 1.40Up
Tubule2494 1094 of 4 2.60Up
Hindgut1967 574 of 4 2.10Up
Heart3760 1614 of 4 3.98Up
Fat body2749 2854 of 4 2.91Up
Ovary487 54 of 4 0.50Down
Testis136 54 of 4 0.10Down
Male accessory glands375 364 of 4 0.40Down
Virgin spermatheca1094 664 of 4 1.16None
Mated spermatheca1059 164 of 4 1.12None
Adult carcass3618 834 of 4 3.80Up
Larval CNS506 504 of 4 0.54Down
Larval Salivary gland362 144 of 4 0.38Down
Larval midgut1171 254 of 4 1.24None
Larval tubule930 674 of 4 1.00None
Larval hindgut743 234 of 4 0.79None
Larval fat body725 824 of 4 0.80None
Larval trachea1015 344 of 4 1.07None
Larval carcass663 404 of 4 0.70Down
S2 cells (growing)1280 234 of 4 1.36Up
Whole fly944 784 of 4

Looking for CG1742-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime