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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17450-RB through 18771 annotations produced 1 hits



tektin /// tektin /// tektin (CG17450 /// CG32819 /// CG32820):

Annotation Number : CG17450
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040028 /// FBgn0052819 /// FBgn0052820
Gbrowse : chrX:21477121-21479885 (-) // 99.94 // /// chrX:21483216-21484978 (-) // 81.73 // /// chrX:21489308-21491070 (-) // 81.73 //
Probeset : 1625086_s_at
Accessions : protein= NP_728438; /// NP_728439; /// NP_728441; /// NP_728442; /// NP_728444; /// NP_728445;, nucleotide= NM_167761; /// NM_167762; /// NM_167764; /// NM_167765; /// NM_167767; /// NM_167768;
Pathway : 0005874 // microtubule // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040028 /// FBgn0052819 /// FBgn0052820.
BioGrid reports that CG17450 interacts with CG8854 CG17777 CG18745 CG2168 CG2198 CG2238 CG2718 CG31108 CG3510 CG3689 CG3731 CG3835 CG3924 CG5028 CG5966 CG6692 CG8206 CG9036 CG9184 CG9745 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye4 10 of 4 0.06Down
Thoracicoabdominal ganglion2 10 of 4 0.00Down
Salivary gland5 30 of 4 0.07Down
Crop3 10 of 4 0.00Down
Midgut2 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut3 10 of 4 0.00Down
Heart1 00 of 4 0.03Down
Fat body1 10 of 4 0.02Down
Ovary1 00 of 4 0.00Down
Testis1054 754 of 414.40Up
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca2 10 of 4 0.04Down
Mated spermatheca1 00 of 4 0.03Down
Adult carcass5 40 of 4 0.10Down
Larval CNS1 10 of 4 0.02Down
Larval Salivary gland2 00 of 4 0.03Down
Larval midgut12 40 of 4 0.16Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.02Down
Larval fat body76 411 of 4 1.00None
Larval trachea2 20 of 4 0.03Down
Larval carcass1 00 of 4 0.02Down
S2 cells (growing)2 00 of 4 0.03Down
Whole fly73 24 of 4

Looking for CG17450-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime