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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17462-RA through 18771 annotations produced 1 hits



CG17462 (Trf4-2):

Annotation Number : CG17462
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039251
Gbrowse : chr3R:20751026-20752576 (+) // 100.0 //
Probeset : 1639251_at
Accessions : protein= NP_651313;, nucleotide= NM_143056;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity
Interpro : 0003887 // DNA-directed DNA polymerase activity // inferred from sequence or structural similarity /// 0003887 // DNA-di
FlyMine data for FBgn0039251.
BDGP gene expression has embryonic in situ data for CG17462: 20 pix of staining in 4 body parts.
BioGrid reports that CG17462 interacts with CG2048 CG7808 .
VDRC has 2 RNAi stocks for FBgn0039251 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 01 of 4 0.00Down
Head4 ± 10 of 4 0.00Down
Eye5 ± 10 of 4 0.03Down
Thoracicoabdominal ganglion4 ± 11 of 4 0.00Down
Salivary gland18 ± 41 of 4 0.11Down
Crop5 ± 10 of 4 0.00Down
Midgut5 ± 10 of 4 0.00Down
Tubule6 ± 10 of 4 0.00Down
Hindgut4 ± 10 of 4 0.00Down
Heart5 ± 10 of 4 0.03Down
Fat body8 ± 21 of 4 0.05Down
Ovary341 ± 124 of 4 2.00Up
Testis506 ± 124 of 4 3.00Up
Male accessory glands7 ± 10 of 4 0.00Down
Virgin spermatheca5 ± 11 of 4 0.03Down
Mated spermatheca6 ± 20 of 4 0.04Down
Adult carcass15 ± 41 of 4 0.10Down
Larval CNS5 ± 21 of 4 0.03Down
Larval Salivary gland3 ± 11 of 4 0.02Down
Larval midgut9 ± 11 of 4 0.06Down
Larval tubule7 ± 00 of 4 0.00Down
Larval hindgut5 ± 01 of 4 0.03Down
Larval fat body75 ± 364 of 4 0.40None
Larval trachea7 ± 01 of 4 0.04Down
Larval carcass4 ± 10 of 4 0.03Down
S2 cells (growing)6 ± 01 of 4 0.04Down
Whole fly169 ± 184 of 4

Looking for CG17462-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime