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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17494-RA through 18771 annotations produced 1 hits



(CG17494):

Annotation Number : CG17494
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040011
Gbrowse : chr2L:22471795-22478851 (+) // 100.0 //
Probeset : 1627641_s_at
Accessions : protein= NP_001036397; /// NP_001036398; /// NP_001036399;, nucleotide= NM_001042932; /// NM_001042933; /// NM_001042934;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040011.
BDGP gene expression has embryonic in situ data for CG17494: 4 pix of staining in 1 body parts.
BioGrid reports that CG17494 interacts with CG1968 CG6618 CG8612 .
TRiP has 1 RNAi stocks for FBgn0040011 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040011 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain247 ± 44 of 4 1.20Up
Head125 ± 54 of 4 0.60Down
Eye95 ± 14 of 4 0.45Down
Thoracicoabdominal ganglion224 ± 44 of 4 1.10None
Salivary gland157 ± 154 of 4 0.74Down
Crop143 ± 34 of 4 0.70Down
Midgut86 ± 34 of 4 0.40Down
Tubule116 ± 34 of 4 0.50Down
Hindgut102 ± 54 of 4 0.50Down
Heart87 ± 34 of 4 0.41Down
Fat body143 ± 34 of 4 0.68Down
Ovary391 ± 24 of 4 1.80Up
Testis559 ± 224 of 4 2.60Up
Male accessory glands161 ± 64 of 4 0.80Down
Virgin spermatheca275 ± 194 of 4 1.30Up
Mated spermatheca281 ± 54 of 4 1.33Up
Adult carcass97 ± 74 of 4 0.50Down
Larval CNS328 ± 214 of 4 1.55Up
Larval Salivary gland180 ± 44 of 4 0.85Down
Larval midgut100 ± 54 of 4 0.47Down
Larval tubule176 ± 74 of 4 0.80Down
Larval hindgut141 ± 64 of 4 0.67Down
Larval fat body201 ± 234 of 4 1.00None
Larval trachea120 ± 144 of 4 0.57Down
Larval carcass165 ± 64 of 4 0.78Down
S2 cells (growing)184 ± 34 of 4 0.87Down
Whole fly211 ± 54 of 4

Looking for CG17494-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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