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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17515-RB through 18771 annotations produced 1 hits



Rab21 (Rab21):

Annotation Number : CG17515
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039966
Gbrowse : chrX:22413974-22415093 (-) // 100.0 //
Probeset : 1624079_a_at
Accessions : protein= NP_001036321; /// NP_001036322;, nucleotide= NM_001042856; /// NM_001042857;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0039966.
Homophila reports that CG17515 is a close match (2e-12) to human gene RRAS2;TC21 (NP_001096139), a gene associated with Ovarian carcinoma (3).
TRiP has 1 RNAi stocks for FBgn0039966 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039966 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain177 ± 34 of 4 2.20Up
Head96 ± 24 of 4 1.20Up
Eye124 ± 34 of 4 1.54Up
Thoracicoabdominal ganglion153 ± 34 of 4 1.90Up
Salivary gland104 ± 64 of 4 1.30Up
Crop50 ± 64 of 4 0.60Down
Midgut141 ± 184 of 4 1.70Up
Tubule138 ± 24 of 4 1.70Up
Hindgut86 ± 24 of 4 1.10None
Heart52 ± 34 of 4 0.65Down
Fat body79 ± 64 of 4 0.98None
Ovary142 ± 54 of 4 1.80Up
Testis46 ± 04 of 4 0.60Down
Male accessory glands74 ± 54 of 4 0.90None
Virgin spermatheca118 ± 54 of 4 1.46Up
Mated spermatheca92 ± 44 of 4 1.14None
Adult carcass81 ± 34 of 4 1.00None
Larval CNS76 ± 64 of 4 0.94None
Larval Salivary gland53 ± 74 of 4 0.67Down
Larval midgut94 ± 54 of 4 1.16None
Larval tubule73 ± 34 of 4 0.90None
Larval hindgut77 ± 84 of 4 0.96None
Larval fat body57 ± 44 of 4 0.70Down
Larval trachea44 ± 24 of 4 0.55Down
Larval carcass71 ± 34 of 4 0.89None
S2 cells (growing)44 ± 44 of 4 0.56Down
Whole fly80 ± 34 of 4

Looking for CG17515-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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