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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17524-RA through 18771 annotations produced 1 hits



Glutathione S transferase E3 (GstE3):

Annotation Number : CG17524
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0063497
Gbrowse : chr2R:14288221-14288974 (+) // 100.0 //
Probeset : 1637129_at
Accessions : protein= NP_611325;, nucleotide= NM_137481;
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0063497.
BioGrid reports that CG17524 interacts with CG4057 .
VDRC has 3 RNAi stocks for FBgn0063497 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain125 54 of 4 0.40Down
Head498 144 of 4 1.80Up
Eye338 514 of 4 1.20None
Thoracicoabdominal ganglion162 54 of 4 0.60Down
Salivary gland38 43 of 4 0.14Down
Crop790 304 of 4 2.80Up
Midgut1605 1744 of 4 5.70Up
Tubule1212 1114 of 4 4.30Up
Hindgut1031 234 of 4 3.60Up
Heart712 954 of 4 2.51Up
Fat body617 1154 of 4 2.18Up
Ovary29 34 of 4 0.10Down
Testis265 174 of 4 0.90None
Male accessory glands35 13 of 4 0.10Down
Virgin spermatheca308 264 of 4 1.09None
Mated spermatheca281 224 of 4 0.99None
Adult carcass550 184 of 4 1.90Up
Larval CNS26 44 of 4 0.09Down
Larval Salivary gland38 34 of 4 0.14Down
Larval midgut723 784 of 4 2.55Up
Larval tubule352 724 of 4 1.20None
Larval hindgut277 414 of 4 0.98None
Larval fat body3144 6524 of 411.10Up
Larval trachea144 194 of 4 0.51Down
Larval carcass268 104 of 4 0.95None
S2 cells (growing)211 174 of 4 0.75Down
Whole fly283 114 of 4

Looking for CG17524-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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