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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1753-RA through 18771 annotations produced 1 hits



(CG1753):

Annotation Number : CG1753
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031148
Gbrowse : chrX:20916164-20920127 (+) // 100.0 //
Probeset : 1638171_s_at
Accessions : protein= NP_608424; /// NP_728384;, nucleotide= NM_134580; /// NM_167726;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004122 // cystathionine beta-synthase activity
FlyMine data for FBgn0031148.
BDGP gene expression has embryonic in situ data for CG1753: 12 pix of staining in 5 body parts.
Homophila reports that CG1753 is a close match (1e-139) to human gene CBS (NP_000062), a gene associated with Homocystinuria, B6-responsive and nonresponsive types (3);Thrombosis, hyperhomocysteinemic (3).
BioGrid reports that CG1753 interacts with CG8416 CG4216 .
TRiP has 2 RNAi stocks for FBgn0031148 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031148 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain231 ± 134 of 4 0.70Down
Head159 ± 144 of 4 0.50Down
Eye121 ± 24 of 4 0.39Down
Thoracicoabdominal ganglion166 ± 94 of 4 0.50Down
Salivary gland285 ± 124 of 4 0.92None
Crop278 ± 104 of 4 0.90None
Midgut219 ± 154 of 4 0.70Down
Tubule52 ± 84 of 4 0.20Down
Hindgut116 ± 04 of 4 0.40Down
Heart86 ± 34 of 4 0.28Down
Fat body136 ± 184 of 4 0.44Down
Ovary560 ± 94 of 4 1.80Up
Testis26 ± 24 of 4 0.10Down
Male accessory glands288 ± 284 of 4 0.90None
Virgin spermatheca353 ± 84 of 4 1.14Up
Mated spermatheca310 ± 294 of 4 1.00None
Adult carcass140 ± 104 of 4 0.50Down
Larval CNS236 ± 214 of 4 0.76Down
Larval Salivary gland290 ± 214 of 4 0.94None
Larval midgut116 ± 24 of 4 0.37Down
Larval tubule27 ± 20 of 4 0.10Down
Larval hindgut109 ± 104 of 4 0.35Down
Larval fat body29 ± 43 of 4 0.10Down
Larval trachea315 ± 444 of 4 1.02None
Larval carcass183 ± 424 of 4 0.59None
S2 cells (growing)297 ± 94 of 4 0.96None
Whole fly310 ± 74 of 4

Looking for CG1753-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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