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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17530-RA through 18771 annotations produced 1 hits



Glutathione S transferase E6 (GstE6):

Annotation Number : CG17530
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0063494
Gbrowse : chr2R:14293517-14294270 (+) // 100.0 //
Probeset : 1625744_at
Accessions : protein= NP_611328;, nucleotide= NM_137484;
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0063494.
BioGrid reports that CG17530 interacts with CG4463 .
VDRC has 3 RNAi stocks for FBgn0063494 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain347 ± 84 of 4 0.40Down
Head873 ± 234 of 4 1.00None
Eye376 ± 314 of 4 0.43Down
Thoracicoabdominal ganglion545 ± 134 of 4 0.60Down
Salivary gland218 ± 144 of 4 0.25Down
Crop2560 ± 1064 of 4 2.90Up
Midgut2101 ± 1204 of 4 2.40Up
Tubule2523 ± 2094 of 4 2.90Up
Hindgut2738 ± 554 of 4 3.10Up
Heart645 ± 264 of 4 0.74Down
Fat body64 ± 164 of 4 0.07Down
Ovary1097 ± 264 of 4 1.30Up
Testis95 ± 44 of 4 0.10Down
Male accessory glands476 ± 344 of 4 0.50Down
Virgin spermatheca489 ± 194 of 4 0.56Down
Mated spermatheca581 ± 544 of 4 0.67Down
Adult carcass572 ± 314 of 4 0.70Down
Larval CNS128 ± 364 of 4 0.15Down
Larval Salivary gland154 ± 334 of 4 0.18Down
Larval midgut304 ± 474 of 4 0.35Down
Larval tubule95 ± 214 of 4 0.10Down
Larval hindgut970 ± 204 of 4 1.12Up
Larval fat body51 ± 34 of 4 0.10Down
Larval trachea226 ± 284 of 4 0.26Down
Larval carcass301 ± 634 of 4 0.35Down
S2 cells (growing)1087 ± 654 of 4 1.25Up
Whole fly869 ± 264 of 4

Looking for CG17530-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime