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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17540-RA through 18771 annotations produced 1 hits



CG17540 (Spf45):

Annotation Number : CG17540
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086683
Gbrowse : chr2L:22959605-22961179 (-) // 99.66 //
Probeset : 1633019_a_at
Accessions : protein= NP_001036424; /// NP_001036425; /// NP_001036426;, nucleotide= NM_001042959; /// NM_001042960; /// NM_001042961;
Pathway : via spliceosome // inferred from genetic interaction /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0086683.
BioGrid reports that CG17540 interacts with CG6713 .
VDRC has 2 RNAi stocks for FBgn0086683 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain399 24 of 4 1.40Up
Head251 44 of 4 0.90None
Eye187 54 of 4 0.65Down
Thoracicoabdominal ganglion305 74 of 4 1.00None
Salivary gland216 94 of 4 0.75Down
Crop234 34 of 4 0.80Down
Midgut251 84 of 4 0.90None
Tubule239 24 of 4 0.80Down
Hindgut250 84 of 4 0.90Down
Heart179 44 of 4 0.62Down
Fat body205 184 of 4 0.71Down
Ovary597 84 of 4 2.10Up
Testis147 34 of 4 0.50Down
Male accessory glands300 94 of 4 1.00None
Virgin spermatheca307 104 of 4 1.06None
Mated spermatheca324 144 of 4 1.11None
Adult carcass194 64 of 4 0.70Down
Larval CNS431 264 of 4 1.48Up
Larval Salivary gland364 104 of 4 1.25Up
Larval midgut203 34 of 4 0.70Down
Larval tubule326 134 of 4 1.10None
Larval hindgut246 34 of 4 0.85Down
Larval fat body207 114 of 4 0.70Down
Larval trachea268 114 of 4 0.92None
Larval carcass251 194 of 4 0.86None
S2 cells (growing)516 64 of 4 1.78Up
Whole fly290 134 of 4

Looking for CG17540-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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