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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17559-RA through 18771 annotations produced 1 hits



Doughnut (dnt):

Annotation Number : CG17559
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024245
Gbrowse : chr2L:19338675-19363224 (-) // 100.0 //
Probeset : 1636380_at
Accessions : protein= NP_477341;, nucleotide= NM_057993;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0024245.
Homophila reports that CG17559 is a close match (6e-12) to human gene CRAF;NS5;RAF1 (NP_002871), a gene associated with LEOPARD syndrome 2, 611554 (3);Noonan syndrome 5, 611553 (3).
BioGrid reports that CG17559 interacts with CG6147 CG6172 CG17348 .
TRiP has 1 RNAi stocks for FBgn0024245 available for purchase.
VDRC has 6 RNAi stocks for FBgn0024245 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 ± 24 of 4 1.00None
Head27 ± 14 of 4 0.50Down
Eye46 ± 44 of 4 0.91None
Thoracicoabdominal ganglion49 ± 34 of 4 1.00None
Salivary gland51 ± 33 of 4 1.01None
Crop51 ± 34 of 4 1.00None
Midgut13 ± 13 of 4 0.30Down
Tubule10 ± 00 of 4 0.20Down
Hindgut17 ± 24 of 4 0.30Down
Heart50 ± 44 of 4 0.98None
Fat body12 ± 61 of 4 0.25Down
Ovary120 ± 44 of 4 2.30Up
Testis80 ± 24 of 4 1.60Up
Male accessory glands39 ± 04 of 4 0.80None
Virgin spermatheca22 ± 24 of 4 0.44Down
Mated spermatheca22 ± 14 of 4 0.43Down
Adult carcass16 ± 31 of 4 0.30Down
Larval CNS107 ± 34 of 4 2.10Up
Larval Salivary gland17 ± 24 of 4 0.33Down
Larval midgut15 ± 23 of 4 0.30Down
Larval tubule14 ± 04 of 4 0.30Down
Larval hindgut22 ± 14 of 4 0.45Down
Larval fat body31 ± 54 of 4 0.60Down
Larval trachea63 ± 74 of 4 1.24None
Larval carcass17 ± 23 of 4 0.33Down
S2 cells (growing)116 ± 44 of 4 2.26Up
Whole fly51 ± 44 of 4

Looking for CG17559-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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