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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17568-RA through 18771 annotations produced 1 hits



(CG17568):

Annotation Number : CG17568
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032763
Gbrowse : chr2L:19180037-19181603 (-) // 100.0 //
Probeset : 1631836_at
Accessions : protein= NP_609951;, nucleotide= NM_136107;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0032763.
Homophila reports that CG17568 is a close match (5e-11) to human gene HSAL1;SALL1;TBS (NP_002959), a gene associated with Townes-Brocks branchiootorenal-like syndrome, 107480 (3);Townes-Brocks syndrome, 107480 (3).
BioGrid reports that CG17568 interacts with CG17826 CG5078 CG5923 CG2671 CG3097 CG32479 CG3972 CG3997 CG17420 CG4264 CG4427 CG4709 CG4863 CG5271 CG5282 CG5518 CG6523 CG6964 CG7143 CG7386 CG7622 CG7726 CG8159 CG8495 CG9282 CG9379 CG9983 CG33548 .
TRiP has 1 RNAi stocks for FBgn0032763 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032763 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 ± 24 of 4 1.30Up
Head23 ± 34 of 4 0.50Down
Eye40 ± 34 of 4 0.95None
Thoracicoabdominal ganglion47 ± 14 of 4 1.10None
Salivary gland11 ± 10 of 4 0.26Down
Crop20 ± 24 of 4 0.50Down
Midgut14 ± 03 of 4 0.30Down
Tubule25 ± 13 of 4 0.60Down
Hindgut18 ± 24 of 4 0.40Down
Heart14 ± 24 of 4 0.33Down
Fat body15 ± 53 of 4 0.37Down
Ovary119 ± 14 of 4 2.80Up
Testis14 ± 13 of 4 0.30Down
Male accessory glands10 ± 00 of 4 0.20Down
Virgin spermatheca14 ± 23 of 4 0.33Down
Mated spermatheca19 ± 24 of 4 0.46Down
Adult carcass18 ± 11 of 4 0.40Down
Larval CNS39 ± 14 of 4 0.92None
Larval Salivary gland22 ± 22 of 4 0.52Down
Larval midgut7 ± 21 of 4 0.18Down
Larval tubule39 ± 24 of 4 0.90None
Larval hindgut16 ± 14 of 4 0.38Down
Larval fat body44 ± 24 of 4 1.00None
Larval trachea17 ± 14 of 4 0.40Down
Larval carcass14 ± 04 of 4 0.34Down
S2 cells (growing)20 ± 14 of 4 0.47Down
Whole fly42 ± 34 of 4

Looking for CG17568-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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