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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17603-RA through 18771 annotations produced 1 hits



chr3R:2472610-2481775 (+) // 100.0 // (TFIID 230 kda subunit):

Annotation Number : CG17603
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1632256_at
Accessions : protein= , nucleotide= NP_001163532; /// NP_476956; /// NP_996159; /// NP_996160;
Pathway : "0000117 // regulation of transcription involved in G2/M-phase of mitotic cell cycle // inferred from mutant phenotype /
Interpro : DNA-dependent // non-traceable author statement /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG17603 is a close match (0) to human gene BA2R;CCG1;DYT3;TAF1;TAF2A (NP_620278), a gene associated with Dystonia-Parkinsonism, X-linked, 314250 (3).
BioGrid reports that CG17603 interacts with CG6667 CG9375 CG9375 CG18085 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain188 ± 44 of 4 1.70Up
Head97 ± 54 of 4 0.90None
Eye83 ± 64 of 4 0.75Down
Thoracicoabdominal ganglion149 ± 64 of 4 1.30Up
Salivary gland184 ± 44 of 4 1.65Up
Crop120 ± 54 of 4 1.10None
Midgut80 ± 54 of 4 0.70Down
Tubule126 ± 44 of 4 1.10Up
Hindgut84 ± 34 of 4 0.80Down
Heart93 ± 24 of 4 0.84Down
Fat body114 ± 64 of 4 1.03None
Ovary229 ± 24 of 4 2.10Up
Testis108 ± 74 of 4 1.00None
Male accessory glands171 ± 34 of 4 1.50Up
Virgin spermatheca191 ± 54 of 4 1.71Up
Mated spermatheca174 ± 94 of 4 1.56Up
Adult carcass98 ± 24 of 4 0.90Down
Larval CNS272 ± 184 of 4 2.44Up
Larval Salivary gland164 ± 84 of 4 1.47Up
Larval midgut71 ± 44 of 4 0.64Down
Larval tubule107 ± 24 of 4 1.00None
Larval hindgut107 ± 44 of 4 0.97None
Larval fat body112 ± 54 of 4 1.00None
Larval trachea146 ± 104 of 4 1.31Up
Larval carcass91 ± 34 of 4 0.82Down
S2 cells (growing)123 ± 64 of 4 1.11None
Whole fly111 ± 34 of 4

Looking for CG17603-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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