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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17611-RA through 18771 annotations produced 1 hits



eIF6 (eIF6):

Annotation Number : CG17611
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034915
Gbrowse : chr2R:19736768-19737822 (-) // 100.0 //
Probeset : 1633284_at
Accessions : protein= NP_659573;, nucleotide= NM_145105;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // non-traceable author sta
Interpro : 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // tran
FlyMine data for FBgn0034915.
BDGP gene expression has embryonic in situ data for eIF6: 9 pix of staining in 8 body parts.
VDRC has 1 RNAi stocks for FBgn0034915 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 14 of 4 0.40Down
Head123 64 of 4 0.50Down
Eye101 44 of 4 0.42Down
Thoracicoabdominal ganglion114 54 of 4 0.50Down
Salivary gland157 104 of 4 0.64Down
Crop133 44 of 4 0.50Down
Midgut219 134 of 4 0.90None
Tubule132 124 of 4 0.50Down
Hindgut125 34 of 4 0.50Down
Heart121 24 of 4 0.50Down
Fat body151 124 of 4 0.62Down
Ovary342 44 of 4 1.40Up
Testis239 84 of 4 1.00None
Male accessory glands248 84 of 4 1.00None
Virgin spermatheca94 64 of 4 0.39Down
Mated spermatheca121 24 of 4 0.50Down
Adult carcass145 64 of 4 0.60Down
Larval CNS353 94 of 4 1.45Up
Larval Salivary gland264 114 of 4 1.08None
Larval midgut148 104 of 4 0.61Down
Larval tubule113 54 of 4 0.50Down
Larval hindgut183 104 of 4 0.75Down
Larval fat body137 94 of 4 0.60Down
Larval trachea321 424 of 4 1.32Up
Larval carcass270 514 of 4 1.11None
S2 cells (growing)327 34 of 4 1.34Up
Whole fly244 114 of 4

Looking for CG17611-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime