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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17612-RB through 18771 annotations produced 1 hits



(CG17612):

Annotation Number : CG17612
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031597
Gbrowse : chr2L:4380507-4382719 (-) // 100.0 //
Probeset : 1625152_s_at
Accessions : protein= NP_608824; /// NP_722973;, nucleotide= NM_134980; /// NM_164581;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0031597.
Homophila reports that CG17612 is a close match (6e-12) to human gene SLUG;SNAI2;WS2D (NP_003059), a gene associated with Melanoma metastasis, modification of (1);Piebaldism, 172800 (3);Waardenburg syndrome, type IID, 608890 (3).
BioGrid reports that CG17612 interacts with CG8092 .
VDRC has 2 RNAi stocks for FBgn0031597 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 04 of 4 0.60Down
Head13 ± 14 of 4 0.70Down
Eye19 ± 14 of 4 0.94None
Thoracicoabdominal ganglion15 ± 04 of 4 0.70Down
Salivary gland31 ± 63 of 4 1.54None
Crop16 ± 14 of 4 0.80None
Midgut17 ± 14 of 4 0.80None
Tubule11 ± 03 of 4 0.60Down
Hindgut24 ± 14 of 4 1.20None
Heart50 ± 14 of 4 2.50Up
Fat body15 ± 24 of 4 0.78None
Ovary21 ± 44 of 4 1.10None
Testis13 ± 14 of 4 0.70Down
Male accessory glands14 ± 11 of 4 0.70Down
Virgin spermatheca10 ± 13 of 4 0.54Down
Mated spermatheca8 ± 11 of 4 0.41Down
Adult carcass15 ± 32 of 4 0.80None
Larval CNS72 ± 144 of 4 3.58Up
Larval Salivary gland26 ± 24 of 4 1.31None
Larval midgut9 ± 13 of 4 0.49Down
Larval tubule21 ± 14 of 4 1.00None
Larval hindgut27 ± 34 of 4 1.38None
Larval fat body15 ± 14 of 4 0.70None
Larval trachea30 ± 44 of 4 1.52Up
Larval carcass17 ± 24 of 4 0.88None
S2 cells (growing)41 ± 14 of 4 2.05Up
Whole fly20 ± 14 of 4

Looking for CG17612-RB. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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