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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17633-RA through 18771 annotations produced 1 hits



/// (CG17633 /// DsecCG17633):

Annotation Number : CG17633
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032144
Gbrowse : chr2L:9769066-9770415 (+) // 100.0 //
Probeset : 1625948_at
Accessions : protein= NP_609310;, nucleotide= NM_135466;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred fr
Interpro : 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activ
FlyMine data for FBgn0032144.
BDGP gene expression has embryonic in situ data for CG17633: 10 pix of staining in 2 body parts.
VDRC has 4 RNAi stocks for FBgn0032144 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head17 121 of 4 0.00Down
Eye7 21 of 4 0.01Down
Thoracicoabdominal ganglion6 00 of 4 0.00Down
Salivary gland19 30 of 4 0.02Down
Crop21 52 of 4 0.00Down
Midgut6316 1534 of 4 4.90Up
Tubule6 10 of 4 0.00Down
Hindgut10 10 of 4 0.00Down
Heart4 10 of 4 0.00Down
Fat body3 10 of 4 0.00Down
Ovary1 00 of 4 0.00Down
Testis4 01 of 4 0.00Down
Male accessory glands3 00 of 4 0.00Down
Virgin spermatheca13 21 of 4 0.01Down
Mated spermatheca8 20 of 4 0.01Down
Adult carcass19 42 of 4 0.00Down
Larval CNS14 201 of 4 0.01Down
Larval Salivary gland5 20 of 4 0.00Down
Larval midgut6386 2054 of 4 4.99Up
Larval tubule5 20 of 4 0.00Down
Larval hindgut9 31 of 4 0.01Down
Larval fat body3 10 of 4 0.00Down
Larval trachea12 141 of 4 0.01Down
Larval carcass5 20 of 4 0.00Down
S2 cells (growing)2 00 of 4 0.00Down
Whole fly1280 1324 of 4

Looking for CG17633-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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