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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG17637-RA through 18771 annotations produced 1 hits


(CG17637):

Annotation Number : CG17637
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037004
Gbrowse : chr3L:20497285-20498800 (+) // 100.0 //
Probeset : 1632504_at
Accessions : protein= NP_649237;, nucleotide= NM_140980;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0015144 // carbohydrate transmembrane transporter a
FlyMine data for FBgn0037004.
BioGrid reports that CG17637 interacts with CG7441 .
VDRC has 3 RNAi stocks for FBgn0037004 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.03Down
Crop1 ± 00 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body0 ± 00 of 4 0.01Down
Ovary1 ± 00 of 4 0.00Down
Testis14 ± 62 of 4 0.10Down
Male accessory glands877 ± 874 of 4 7.00Up
Virgin spermatheca0 ± 00 of 4 0.01Down
Mated spermatheca0 ± 00 of 4 0.00Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland0 ± 00 of 4 0.00Down
Larval midgut1 ± 00 of 4 0.01Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body0 ± 00 of 4 0.00Down
Larval trachea0 ± 00 of 4 0.01Down
Larval carcass0 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly124 ± 184 of 4

Looking for CG17637-RA. 1 entries matched from 18771, in 3 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime