FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG1764-RA through 18771 annotations produced 1 hits

(CG1764):

Annotation Number : CG1764
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030467
Gbrowse : chrX:13188505-13190684 (-) // 99.72 //
Probeset : 1632264_at
Accessions : protein= NP_572871;, nucleotide= NM_132643;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : "0016403 // dimethylargininase activity // inferred from sequence or structural similarity /// 0016403 // dimethylargini
FlyMine data for FBgn0030467.
BDGP gene expression has embryonic in situ data for CG1764: 17 pix of staining in 3 body parts.
VDRC has 1 RNAi stocks for FBgn0030467 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	279 ± 4	4 of 4	7.00	Up
Head	82 ± 2	4 of 4	2.10	Up
Eye	76 ± 6	4 of 4	1.91	Up
Thoracicoabdominal ganglion	349 ± 6	4 of 4	8.80	Up
Salivary gland	45 ± 3	3 of 4	1.14	None
Crop	43 ± 4	4 of 4	1.10	None
Midgut	25 ± 2	2 of 4	0.60	Down
Tubule	13 ± 0	1 of 4	0.30	Down
Hindgut	43 ± 2	4 of 4	1.10	None
Heart	26 ± 2	4 of 4	0.67	Down
Fat body	18 ± 3	2 of 4	0.47	Down
Ovary	62 ± 2	4 of 4	1.60	Up
Testis	19 ± 1	4 of 4	0.50	Down
Male accessory glands	72 ± 7	4 of 4	1.80	Up
Virgin spermatheca	28 ± 2	4 of 4	0.72	Down
Mated spermatheca	33 ± 4	4 of 4	0.84	None
Adult carcass	32 ± 2	3 of 4	0.80	None
Larval CNS	192 ± 21	4 of 4	4.85	Up
Larval Salivary gland	58 ± 4	4 of 4	1.48	Up
Larval midgut	36 ± 1	2 of 4	0.92	None
Larval tubule	18 ± 0	3 of 4	0.50	Down
Larval hindgut	62 ± 5	4 of 4	1.57	Up
Larval fat body	14 ± 2	1 of 4	0.40	Down
Larval trachea	100 ± 5	4 of 4	2.54	Up
Larval carcass	39 ± 4	4 of 4	1.01	None
S2 cells (growing)	102 ± 3	4 of 4	2.57	Up
Whole fly	39 ± 1	4 of 4

Looking for CG1764-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720