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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17642-RA through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L48 (mRpL48):

Annotation Number : CG17642
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031357
Gbrowse : chr2L:1710465-1711466 (+) // 100.0 //
Probeset : 1638783_at
Accessions : protein= NP_608613;, nucleotide= NM_134769;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0031357.
BDGP gene expression has embryonic in situ data for mRpL48: 10 pix of staining in 12 body parts.
VDRC has 6 RNAi stocks for FBgn0031357 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain236 94 of 4 1.70Up
Head107 54 of 4 0.80Down
Eye144 64 of 4 1.07None
Thoracicoabdominal ganglion208 34 of 4 1.50Up
Salivary gland92 24 of 4 0.68Down
Crop78 34 of 4 0.60Down
Midgut126 34 of 4 0.90None
Tubule114 34 of 4 0.80Down
Hindgut158 34 of 4 1.20None
Heart154 114 of 4 1.14None
Fat body164 304 of 4 1.21None
Ovary183 34 of 4 1.40Up
Testis41 34 of 4 0.30Down
Male accessory glands80 64 of 4 0.60Down
Virgin spermatheca62 54 of 4 0.46Down
Mated spermatheca62 44 of 4 0.46Down
Adult carcass71 84 of 4 0.50Down
Larval CNS211 154 of 4 1.56Up
Larval Salivary gland164 184 of 4 1.21None
Larval midgut136 34 of 4 1.00None
Larval tubule55 34 of 4 0.40Down
Larval hindgut202 134 of 4 1.49Up
Larval fat body38 14 of 4 0.30Down
Larval trachea216 264 of 4 1.60Up
Larval carcass114 174 of 4 0.84None
S2 cells (growing)181 64 of 4 1.34Up
Whole fly135 84 of 4

Looking for CG17642-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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