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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17650-RA through 18771 annotations produced 1 hits



(CG17650):

Annotation Number : CG17650
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031365
Gbrowse : chr2L:1758285-1759078 (-) // 100.0 //
Probeset : 1639313_at
Accessions : protein= NP_608621;, nucleotide= NM_134777;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031365.
VDRC has 2 RNAi stocks for FBgn0031365 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 13 of 4 0.20Down
Head8 ± 22 of 4 0.20Down
Eye6 ± 00 of 4 0.19Down
Thoracicoabdominal ganglion7 ± 00 of 4 0.20Down
Salivary gland8 ± 20 of 4 0.25Down
Crop10 ± 22 of 4 0.30Down
Midgut12 ± 12 of 4 0.30Down
Tubule5 ± 00 of 4 0.20Down
Hindgut7 ± 14 of 4 0.20Down
Heart7 ± 12 of 4 0.22Down
Fat body17 ± 64 of 4 0.51Down
Ovary6 ± 03 of 4 0.20Down
Testis410 ± 174 of 411.60Up
Male accessory glands5 ± 00 of 4 0.20Down
Virgin spermatheca11 ± 03 of 4 0.33Down
Mated spermatheca11 ± 14 of 4 0.33Down
Adult carcass17 ± 04 of 4 0.50Down
Larval CNS6 ± 02 of 4 0.18Down
Larval Salivary gland9 ± 10 of 4 0.26Down
Larval midgut8 ± 10 of 4 0.23Down
Larval tubule11 ± 13 of 4 0.30Down
Larval hindgut4 ± 02 of 4 0.13Down
Larval fat body96 ± 324 of 4 2.70None
Larval trachea7 ± 11 of 4 0.21Down
Larval carcass13 ± 24 of 4 0.37Down
S2 cells (growing)3 ± 10 of 4 0.09Down
Whole fly35 ± 24 of 4

Looking for CG17650-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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